A=Drosophilapseudoobscura.Q28WW7, B=Caenorhabditiselegans.G5EG86, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 112 A78-B3 A94-B19 A103-B28 ( A78 B3 A94 B19 A103 B28 )
2 106.8 A23-B5 A30-B12 A39-B21 ( A23 B5 A30 B12 A39 B21 )
3 84.3 A78-B2 A102-B26 ( A78 B2 A102 B26 )
4 80.9 A74-B3 A103-B32 ( A74 B3 A103 B32 )
5 80.9 A88-B1 A98-B11 ( A88 B1 A98 B11 )
6 80.2 A72-B1 A103-B32 ( A72 B1 A103 B32 )
7 79.2 A40-B4 A52-B16 ( A40 B4 A52 B16 )
8 79 A57-B4 A68-B15 ( A57 B4 A68 B15 )
9 77.7 A46-B4 A57-B15 ( A46 B4 A57 B15 )
10 77.6 A68-B4 A79-B15 ( A68 B4 A79 B15 )
11 77.5 A68-B3 A93-B28 ( A68 B3 A93 B28 )
12 76.1 A106-B4 A111-B9 ( A106 B4 A111 B9 )
13 75.7 A80-B4 A102-B26 ( A80 B4 A102 B26 )
14 75.4 A16-B13 A38-B35 ( A16 B13 A38 B35 )
15 74.7 A66-B1 A93-B28 ( A66 B1 A93 B28 )
16 74.7 A70-B5 A93-B28 ( A70 B5 A93 B28 )
17 74.6 A21-B20 A29-B28 ( A21 B20 A29 B28 )
18 74.6 A23-B23 A35-B35 ( A23 B23 A35 B35 )
19 74.5 A85-B4 A108-B27 ( A85 B4 A108 B27 )
20 73.9 A40-B11 A53-B24 ( A40 B11 A53 B24 )
21 73.4 A13-B11 A30-B28 ( A13 B11 A30 B28 )
22 73 A9-B14 A24-B29 ( A9 B14 A24 B29 )
23 71.4 A83-B2 A108-B27 ( A83 B2 A108 B27 )
24 50.9 A40-B3 ( A40 B3 )
25 49.1 A97-B5 ( A97 B5 )
26 46.4 A97-B4 ( A97 B4 )
27 43.6 A114-B3 ( A114 B3 )
28 42.4 A55-B32 ( A55 B32 )
29 42.4 A63-B3 ( A63 B3 )
30 42.1 A91-B13 ( A91 B13 )
31 41.9 A40-B2 ( A40 B2 )
32 41.8 A72-B14 ( A72 B14 )
33 41.8 A83-B14 ( A83 B14 )
34 41.5 A21-B1 ( A21 B1 )
35 41.4 A40-B12 ( A40 B12 )
36 41.1 A50-B2 ( A50 B2 )
37 41.1 A61-B2 ( A61 B2 )
38 41 A95-B3 ( A95 B3 )
39 40.7 A74-B16 ( A74 B16 )
40 40.7 A85-B16 ( A85 B16 )
41 40.4 A50-B15 ( A50 B15 )
42 40 A74-B17 ( A74 B17 )
43 40 A85-B17 ( A85 B17 )
45 39.7 A52-B3 ( A52 B3 )
46 39.7 A97-B17 ( A97 B17 )
47 39.3 A25-B12 ( A25 B12 )
48 39.3 A55-B26 ( A55 B26 )
49 39.3 A74-B4 ( A74 B4 )
52 38.7 A46-B3 ( A46 B3 )
53 38.7 A57-B3 ( A57 B3 )
55 38.6 A85-B3 ( A85 B3 )
56 38.5 A110-B13 ( A110 B13 )
57 38.3 A63-B4 ( A63 B4 )
58 38.2 A27-B33 ( A27 B33 )
59 38.1 A93-B19 ( A93 B19 )
60 37.9 A7-B35 ( A7 B35 )
61 37.9 A38-B1 ( A38 B1 )
62 37.9 A50-B1 ( A50 B1 )
63 37.9 A61-B1 ( A61 B1 )
64 37.9 A76-B25 ( A76 B25 )
65 37.9 A83-B1 ( A83 B1 )
66 37.5 A42-B32 ( A42 B32 )
69 37.3 A46-B15 ( A46 B15 )
70 37.3 A52-B4 ( A52 B4 )
72 37 A27-B14 ( A27 B14 )
73 36.8 A44-B1 ( A44 B1 )
75 36.7 A106-B9 ( A106 B9 )
76 36.4 A112-B2 ( A112 B2 )
77 36.2 A11-B26 ( A11 B26 )
78 36.2 A72-B2 ( A72 B2 )
79 36.2 A118-B23 ( A118 B23 )
80 36.1 A91-B17 ( A91 B17 )
81 35.8 A9-B25 ( A9 B25 )
82 35.8 A16-B12 ( A16 B12 )
83 35.7 A31-B10 ( A31 B10 )
84 35.7 A38-B14 ( A38 B14 )
85 35.6 A29-B18 ( A29 B18 )
86 35.5 A74-B13 ( A74 B13 )
87 35.5 A85-B13 ( A85 B13 )
88 35.4 A42-B5 ( A42 B5 )
89 35.4 A95-B4 ( A95 B4 )