A=Drosophilamelanogaster.Q9W157, B=Drosophilapseudoobscura.Q28WW7, Threshold for similarity =35, length of fragment = 30, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no.
Average Score
Fragment alignment
Fasta links
1
307.1
A12-B40
A36-B64
A58-B86
A63-B91
A68-B96
A86-B114
A91-B119
(
A12
B40
A36
B64
A58
B86
A63
B91
A68
B96
A86
B114
A91
B119
)
2
283.8
A41-B35
A47-B41
A53-B47
A58-B52
A63-B57
A68-B62
A75-B69
(
A41
B35
A47
B41
A53
B47
A58
B52
A63
B57
A68
B62
A75
B69
)
3
275.3
A22-B27
A33-B38
A47-B52
A53-B58
A58-B63
A75-B80
(
A22
B27
A33
B38
A47
B52
A53
B58
A58
B63
A75
B80
)
5
234.7
A8-B10
A13-B15
A18-B20
A32-B34
A39-B41
A50-B52
(
A8
B10
A13
B15
A18
B20
A32
B34
A39
B41
A50
B52
)
6
227.6
A35-B40
A47-B52
A53-B58
A58-B63
A75-B80
(
A35
B40
A47
B52
A53
B58
A58
B63
A75
B80
)
7
226.8
A47-B74
A53-B80
A58-B85
A86-B113
A92-B119
(
A47
B74
A53
B80
A58
B85
A86
B113
A92
B119
)
8
223.7
A10-B12
A15-B17
A32-B34
A39-B41
A50-B52
(
A10
B12
A15
B17
A32
B34
A39
B41
A50
B52
)
10
211.6
A37-B42
A47-B52
A53-B58
A58-B63
A75-B80
(
A37
B42
A47
B52
A53
B58
A58
B63
A75
B80
)
11
210.8
A12-B14
A18-B20
A32-B34
A39-B41
A50-B52
(
A12
B14
A18
B20
A32
B34
A39
B41
A50
B52
)
12
210.5
A18-B17
A47-B46
A52-B51
A57-B56
A75-B74
(
A18
B17
A47
B46
A52
B51
A57
B56
A75
B74
)
14
196.2
A22-B26
A44-B48
A53-B57
A65-B69
A74-B78
(
A22
B26
A44
B48
A53
B57
A65
B69
A74
B78
)
17
180.9
A47-B69
A56-B78
A63-B85
A68-B90
(
A47
B69
A56
B78
A63
B85
A68
B90
)
18
179.7
A25-B32
A30-B37
A54-B61
A67-B74
A78-B85
(
A25
B32
A30
B37
A54
B61
A67
B74
A78
B85
)
19
177.9
A47-B57
A52-B62
A58-B68
A75-B85
(
A47
B57
A52
B62
A58
B68
A75
B85
)
20
176.4
A31-B69
A47-B85
A53-B91
A58-B96
(
A31
B69
A47
B85
A53
B91
A58
B96
)
21
176.1
A6-B7
A11-B12
A67-B68
A76-B77
(
A6
B7
A11
B12
A67
B68
A76
B77
)
23
173.2
A47-B58
A56-B67
A63-B74
A68-B79
(
A47
B58
A56
B67
A63
B74
A68
B79
)
24
172.5
A47-B79
A52-B84
A58-B90
A87-B119
(
A47
B79
A52
B84
A58
B90
A87
B119
)
25
172.5
A47-B47
A57-B57
A62-B62
A68-B68
(
A47
B47
A57
B57
A62
B62
A68
B68
)
26
172.3
A4-B5
A10-B11
A67-B68
A76-B77
(
A4
B5
A10
B11
A67
B68
A76
B77
)
28
170
A47-B68
A52-B73
A58-B79
A74-B95
(
A47
B68
A52
B73
A58
B79
A74
B95
)
29
169.6
A25-B48
A31-B54
A63-B86
A68-B91
(
A25
B48
A31
B54
A63
B86
A68
B91
)
30
165.4
A47-B63
A53-B69
A58-B74
A75-B91
(
A47
B63
A53
B69
A58
B74
A75
B91
)
31
164.3
A47-B26
A64-B43
A69-B48
A78-B57
(
A47
B26
A64
B43
A69
B48
A78
B57
)
32
158.6
A45-B71
A53-B79
A65-B91
A81-B107
(
A45
B71
A53
B79
A65
B91
A81
B107
)
33
158.3
A14-B16
A32-B34
A39-B41
A50-B52
(
A14
B16
A32
B34
A39
B41
A50
B52
)
34
157.1
A45-B60
A53-B68
A65-B80
A75-B90
(
A45
B60
A53
B68
A65
B80
A75
B90
)
35
156.3
A4-B1
A28-B25
A38-B35
A89-B86
(
A4
B1
A28
B25
A38
B35
A89
B86
)
37
151.8
A45-B49
A53-B57
A65-B69
A74-B78
(
A45
B49
A53
B57
A65
B69
A74
B78
)
38
151.3
A57-B79
A63-B85
A68-B90
(
A57
B79
A63
B85
A68
B90
)
39
151
A57-B51
A63-B57
A68-B62
A75-B69
(
A57
B51
A63
B57
A68
B62
A75
B69
)
40
149.4
A20-B54
A25-B59
A31-B65
A63-B97
(
A20
B54
A25
B59
A31
B65
A63
B97
)
41
148.5
A57-B68
A63-B74
A68-B79
(
A57
B68
A63
B74
A68
B79
)
42
146.5
A63-B80
A68-B85
A83-B100
(
A63
B80
A68
B85
A83
B100
)
43
145.9
A63-B69
A68-B74
A79-B85
(
A63
B69
A68
B74
A79
B85
)
44
145.9
A29-B16
A38-B25
A45-B32
A74-B61
(
A29
B16
A38
B25
A45
B32
A74
B61
)
45
142.6
A59-B48
A64-B53
A69-B58
(
A59
B48
A64
B53
A69
B58
)
46
142.4
A63-B47
A68-B52
A79-B63
(
A63
B47
A68
B52
A79
B63
)
47
141.2
A59-B70
A64-B75
A69-B80
(
A59
B70
A64
B75
A69
B80
)
49
138.4
A59-B81
A64-B86
A69-B91
(
A59
B81
A64
B86
A69
B91
)
50
136.1
A59-B59
A64-B64
A69-B69
(
A59
B59
A64
B64
A69
B69
)
52
135.4
A59-B86
A86-B113
A92-B119
(
A59
B86
A86
B113
A92
B119
)
53
135.3
A69-B97
A86-B114
A91-B119
(
A69
B97
A86
B114
A91
B119
)
54
135
A63-B75
A68-B80
A76-B88
(
A63
B75
A68
B80
A76
B88
)
56
133.8
A63-B58
A68-B63
A79-B74
(
A63
B58
A68
B63
A79
B74
)
58
133.3
A53-B52
A58-B57
A75-B74
(
A53
B52
A58
B57
A75
B74
)
59
132.2
A67-B95
A86-B114
A91-B119
(
A67
B95
A86
B114
A91
B119
)
60
131.9
A8-B9
A67-B68
A76-B77
(
A8
B9
A67
B68
A76
B77
)
61
131.8
A53-B85
A58-B90
A87-B119
(
A53
B85
A58
B90
A87
B119
)
62
129.6
A47-B80
A57-B90
A63-B96
(
A47
B80
A57
B90
A63
B96
)
63
129.3
A53-B74
A58-B79
A74-B95
(
A53
B74
A58
B79
A74
B95
)
66
126.1
A31-B80
A47-B96
A58-B107
(
A31
B80
A47
B96
A58
B107
)
67
126
A57-B84
A86-B113
A92-B119
(
A57
B84
A86
B113
A92
B119
)
68
124.8
A53-B63
A58-B68
A75-B85
(
A53
B63
A58
B68
A75
B85
)
69
124.5
A12-B13
A67-B68
A76-B77
(
A12
B13
A67
B68
A76
B77
)
70
123.7
A29-B26
A38-B35
A89-B86
(
A29
B26
A38
B35
A89
B86
)
72
121.8
A59-B53
A68-B62
A75-B69
(
A59
B53
A68
B62
A75
B69
)
74
121.6
A18-B9
A36-B27
A73-B64
(
A18
B9
A36
B27
A73
B64
)
75
121
A57-B46
A62-B51
A67-B56
(
A57
B46
A62
B51
A67
B56
)
76
118.6
A53-B46
A65-B58
A74-B67
(
A53
B46
A65
B58
A74
B67
)
77
117.5
A35-B25
A67-B57
A77-B67
(
A35
B25
A67
B57
A77
B67
)
78
116.8
A57-B40
A63-B46
A68-B51
(
A57
B40
A63
B46
A68
B51
)
79
116.7
A73-B23
A81-B31
A91-B41
(
A73
B23
A81
B31
A91
B41
)
81
115.5
A63-B52
A68-B57
(
A63
B52
A68
B57
)
82
114.2
A33-B35
A39-B41
A50-B52
(
A33
B35
A39
B41
A50
B52
)
84
113.8
A77-B97
A84-B104
A89-B109
(
A77
B97
A84
B104
A89
B109
)
85
112.2
A6-B66
A31-B91
A52-B112
(
A6
B66
A31
B91
A52
B112
)
86
111.9
A63-B41
A68-B46
(
A63
B41
A68
B46
)
87
111.5
A87-B115
A92-B120
(
A87
B115
A92
B120
)
88
110.1
A20-B76
A30-B86
A42-B98
(
A20
B76
A30
B86
A42
B98
)
89
109.6
A18-B21
A31-B34
(
A18
B21
A31
B34
)
91
108.5
A37-B25
A57-B45
A75-B63
(
A37
B25
A57
B45
A75
B63
)
92
108.4
A39-B26
A45-B32
A74-B61
(
A39
B26
A45
B32
A74
B61
)
93
106.7
A63-B63
A68-B68
(
A63
B63
A68
B68
)
94
106
A89-B116
A94-B121
(
A89
B116
A94
B121
)
95
103.2
A87-B114
A92-B119
(
A87
B114
A92
B119
)
99
95.4
A16-B19
A31-B34
(
A16
B19
A31
B34
)
101
91.5
A69-B86
A83-B100
(
A69
B86
A83
B100
)
102
91.2
A75-B46
A93-B64
(
A75
B46
A93
B64
)
103
90.9
A14-B17
A31-B34
(
A14
B17
A31
B34
)
104
90.9
A69-B75
A79-B85
(
A69
B75
A79
B85
)
105
90
A29-B65
A63-B99
(
A29
B65
A63
B99
)
106
89.8
A59-B58
A75-B74
(
A59
B58
A75
B74
)
107
89.8
A67-B51
A79-B63
(
A67
B51
A79
B63
)
108
89.6
A47-B90
A52-B95
(
A47
B90
A52
B95
)
111
87.7
A67-B62
A79-B74
(
A67
B62
A79
B74
)
112
87.3
A59-B69
A75-B85
(
A59
B69
A75
B85
)
113
86.6
A69-B53
A79-B63
(
A69
B53
A79
B63
)
114
85.9
A59-B64
A75-B80
(
A59
B64
A75
B80
)
115
85.5
A39-B36
A89-B86
(
A39
B36
A89
B86
)
116
85.2
A31-B39
A91-B99
(
A31
B39
A91
B99
)
117
85.1
A67-B84
A83-B100
(
A67
B84
A83
B100
)
118
84.5
A67-B73
A79-B85
(
A67
B73
A79
B85
)
120
83.5
A67-B79
A76-B88
(
A67
B79
A76
B88
)
121
83.5
A69-B70
A76-B77
(
A69
B70
A76
B77
)
122
83.5
A69-B81
A76-B88
(
A69
B81
A76
B88
)
124
82.8
A59-B42
A68-B51
(
A59
B42
A68
B51
)
125
82.8
A59-B75
A75-B91
(
A59
B75
A75
B91
)
126
82.6
A59-B80
A74-B95
(
A59
B80
A74
B95
)
127
82
A85-B99
A95-B109
(
A85
B99
A95
B109
)
128
81.8
A59-B47
A75-B63
(
A59
B47
A75
B63
)
130
81.3
A69-B64
A79-B74
(
A69
B64
A79
B74
)
132
81.1
A59-B36
A75-B52
(
A59
B36
A75
B52
)
134
81.1
A69-B59
A77-B67
(
A69
B59
A77
B67
)
135
80.6
A69-B42
A79-B52
(
A69
B42
A79
B52
)
136
80.4
A67-B46
A78-B57
(
A67
B46
A78
B57
)
138
80.1
A63-B37
A79-B53
(
A63
B37
A79
B53
)
139
79.7
A59-B91
A87-B119
(
A59
B91
A87
B119
)
140
78.8
A59-B92
A64-B97
(
A59
B92
A64
B97
)
141
78.7
A49-B92
A54-B97
(
A49
B92
A54
B97
)
143
78.4
A89-B117
A94-B122
(
A89
B117
A94
B122
)
144
78
A57-B62
A75-B80
(
A57
B62
A75
B80
)
145
77.4
A35-B2
A53-B20
(
A35
B2
A53
B20
)
147
76.7
A79-B23
A85-B29
(
A79
B23
A85
B29
)
149
76.2
A31-B87
A42-B98
(
A31
B87
A42
B98
)
150
76.2
A33-B89
A42-B98
(
A33
B89
A42
B98
)
153
75.5
A45-B82
A53-B90
(
A45
B82
A53
B90
)
154
75.5
A73-B16
A83-B26
(
A73
B16
A83
B26
)
155
75.4
A8-B32
A39-B63
(
A8
B32
A39
B63
)
156
75.1
A77-B48
A93-B64
(
A77
B48
A93
B64
)
157
74.6
A43-B23
A51-B31
(
A43
B23
A51
B31
)
158
74.2
A2-B42
A21-B61
(
A2
B42
A21
B61
)
159
74.2
A65-B47
A74-B56
(
A65
B47
A74
B56
)
161
73.7
A6-B87
A33-B114
(
A6
B87
A33
B114
)
162
73.7
A8-B89
A33-B114
(
A8
B89
A33
B114
)
163
73.4
A57-B73
A75-B91
(
A57
B73
A75
B91
)
164
73.3
A33-B67
A63-B97
(
A33
B67
A63
B97
)
167
73
A87-B29
A92-B34
(
A87
B29
A92
B34
)
169
72.8
A61-B39
A67-B45
(
A61
B39
A67
B45
)
170
71.8
A69-B63
A75-B69
(
A69
B63
A75
B69
)
172
71.2
A67-B85
A81-B99
(
A67
B85
A81
B99
)
173
65.6
A95-B122
(
A95
B122
)
174
58.8
A69-B92
(
A69
B92
)
175
58.1
A33-B36
(
A33
B36
)
176
57.6
A59-B97
(
A59
B97
)
177
55.9
A69-B47
(
A69
B47
)
180
54.8
A75-B57
(
A75
B57
)
183
51.6
A75-B68
(
A75
B68
)
184
51.6
A75-B79
(
A75
B79
)
185
50
A67-B90
(
A67
B90
)
188
45.5
A75-B96
(
A75
B96
)
189
45.2
A53-B96
(
A53
B96
)
192
44.4
A93-B120
(
A93
B120
)
195
44.1
A79-B75
(
A79
B75
)
196
44.1
A79-B86
(
A79
B86
)
197
44.1
A93-B121
(
A93
B121
)
198
43.8
A51-B64
(
A51
B64
)
200
43.3
A85-B19
(
A85
B19
)
203
42.4
A57-B95
(
A57
B95
)
205
42.4
A77-B98
(
A77
B98
)
206
42.4
A79-B38
(
A79
B38
)
207
41.9
A73-B25
(
A73
B25
)
208
41.9
A77-B70
(
A77
B70
)
209
41.9
A77-B81
(
A77
B81
)
210
41.9
A79-B47
(
A79
B47
)
211
41.9
A79-B58
(
A79
B58
)
212
41.9
A79-B69
(
A79
B69
)
213
41.9
A79-B80
(
A79
B80
)
215
41.7
A47-B91
(
A47
B91
)
218
40.6
A55-B30
(
A55
B30
)
219
40.6
A77-B42
(
A77
B42
)
220
40.6
A79-B41
(
A79
B41
)
221
40.5
A59-B98
(
A59
B98
)
223
40
A59-B117
(
A59
B117
)
226
39.5
A67-B96
(
A67
B96
)
228
39.4
A77-B78
(
A77
B78
)
229
39.4
A77-B89
(
A77
B89
)
231
38.7
A31-B76
(
A31
B76
)
232
38.7
A77-B59
(
A77
B59
)
233
38.7
A77-B92
(
A77
B92
)
234
38.7
A79-B91
(
A79
B91
)
235
38.7
A83-B43
(
A83
B43
)
236
38.7
A87-B43
(
A87
B43
)
238
38.5
A69-B52
(
A69
B52
)
239
38.2
A6-B76
(
A6
B76
)
241
38.2
A75-B51
(
A75
B51
)
242
38.2
A75-B62
(
A75
B62
)
244
37.8
A57-B96
(
A57
B96
)
246
37.5
A10-B98
(
A10
B98
)
247
37.5
A25-B100
(
A25
B100
)
248
37.5
A37-B100
(
A37
B100
)
249
37.5
A43-B99
(
A43
B99
)
250
37.1
A63-B109
(
A63
B109
)
251
36.7
A6-B63
(
A6
B63
)
253
36.7
A83-B23
(
A83
B23
)
256
36.7
A87-B21
(
A87
B21
)
257
36.4
A25-B103
(
A25
B103
)
258
36.4
A27-B99
(
A27
B99
)
259
36.4
A79-B2
(
A79
B2
)
267
35.5
A20-B87
(
A20
B87
)
268
35.5
A29-B111
(
A29
B111
)
269
35.5
A33-B78
(
A33
B78
)
272
35.5
A71-B101
(
A71
B101
)
273
35.5
A77-B8
(
A77
B8
)
274
35.5
A89-B75
(
A89
B75
)
276
35.3
A2-B113
(
A2
B113
)
277
35.3
A2-B119
(
A2
B119
)
280
35.3
A77-B53
(
A77
B53
)
281
35.3
A77-B64
(
A77
B64
)
283
35.3
A87-B107
(
A87
B107
)
285
35.3
A95-B32
(
A95
B32
)
286
35.1
A69-B41
(
A69
B41
)