A=Drosophilapseudoobscura.Q28WW7, B=Caenorhabditiselegans.G5EG86, Threshold for similarity =25, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 85.7 A98-B11 A106-B19 A114-B27 ( A98 B11 A106 B19 A114 B27 )
2 84 A98-B3 A107-B12 A115-B20 ( A98 B3 A107 B12 A115 B20 )
3 77.4 A72-B3 A90-B21 A98-B29 ( A72 B3 A90 B21 A98 B29 )
4 71.6 A78-B2 A94-B18 ( A78 B2 A94 B18 )
5 66.9 A62-B3 A74-B15 ( A62 B3 A74 B15 )
6 64.8 A108-B5 A120-B17 ( A108 B5 A120 B17 )
7 62 A72-B2 A85-B15 ( A72 B2 A85 B15 )
8 61.2 A13-B11 A20-B18 ( A13 B11 A20 B18 )
9 58.8 A98-B4 A114-B20 ( A98 B4 A114 B20 )
10 58.6 A16-B12 A39-B35 ( A16 B12 A39 B35 )
11 57.9 A60-B1 A74-B15 ( A60 B1 A74 B15 )
12 57.3 A74-B4 A85-B15 ( A74 B4 A85 B15 )
14 56.7 A90-B4 A113-B27 ( A90 B4 A113 B27 )
15 55.4 A13-B3 A45-B35 ( A13 B3 A45 B35 )
16 55.4 A4-B3 A19-B18 ( A4 B3 A19 B18 )
17 51.9 A83-B3 A92-B12 ( A83 B3 A92 B12 )
19 45.5 A96-B4 ( A96 B4 )
20 44.6 A96-B3 ( A96 B3 )
21 41.4 A62-B2 ( A62 B2 )
22 41.1 A39-B2 ( A39 B2 )
23 40.4 A67-B2 ( A67 B2 )
24 39.7 A51-B2 ( A51 B2 )
25 38.5 A110-B13 ( A110 B13 )
26 38 A25-B12 ( A25 B12 )
27 37.5 A51-B3 ( A51 B3 )
28 37.5 A98-B5 ( A98 B5 )
29 37 A27-B14 ( A27 B14 )
30 36.4 A112-B2 ( A112 B2 )
31 36.4 A114-B3 ( A114 B3 )
32 36.2 A83-B2 ( A83 B2 )
33 36.1 A41-B3 ( A41 B3 )
34 36 A98-B15 ( A98 B15 )
35 35.2 A39-B10 ( A39 B10 )
36 35 A2-B12 ( A2 B12 )
37 34.6 A114-B10 ( A114 B10 )
38 34.5 A72-B15 ( A72 B15 )
39 34.5 A83-B15 ( A83 B15 )
40 34.5 A94-B2 ( A94 B2 )
41 33.8 A96-B5 ( A96 B5 )
42 33.3 A27-B34 ( A27 B34 )
43 32.8 A23-B6 ( A23 B6 )
44 32.8 A27-B35 ( A27 B35 )
45 32.8 A45-B2 ( A45 B2 )
46 32.8 A56-B2 ( A56 B2 )
48 32.1 A49-B1 ( A49 B1 )
49 31.8 A39-B3 ( A39 B3 )
50 31.6 A23-B7 ( A23 B7 )
51 31.5 A85-B4 ( A85 B4 )
53 31.5 A118-B22 ( A118 B22 )
54 31.4 A108-B6 ( A108 B6 )
56 30.9 A41-B12 ( A41 B12 )
57 30.8 A2-B13 ( A2 B13 )
58 30.6 A62-B4 ( A62 B4 )
59 30.4 A16-B13 ( A16 B13 )
60 30.4 A74-B3 ( A74 B3 )
61 30.4 A85-B3 ( A85 B3 )
62 30.2 A76-B14 ( A76 B14 )
63 29.8 A20-B1 ( A20 B1 )
64 29.4 A106-B9 ( A106 B9 )
65 29.3 A18-B30 ( A18 B30 )
66 29.3 A34-B3 ( A34 B3 )
67 28.6 A37-B13 ( A37 B13 )
68 28.6 A112-B10 ( A112 B10 )
70 28.6 A118-B23 ( A118 B23 )
71 28.1 A18-B10 ( A18 B10 )
72 28.1 A74-B11 ( A74 B11 )
73 28.1 A85-B11 ( A85 B11 )
75 27.9 A67-B3 ( A67 B3 )
76 27.9 A78-B3 ( A78 B3 )
77 27.4 A51-B4 ( A51 B4 )
78 27.3 A110-B5 ( A110 B5 )
79 27.3 A110-B6 ( A110 B6 )
80 27.3 A112-B7 ( A112 B7 )
81 27 A45-B1 ( A45 B1 )
82 27 A56-B1 ( A56 B1 )
85 26.6 A56-B35 ( A56 B35 )
86 26.5 A62-B1 ( A62 B1 )
87 26.2 A108-B11 ( A108 B11 )
88 25.9 A88-B10 ( A88 B10 )
89 25.8 A49-B2 ( A49 B2 )
90 25.8 A60-B2 ( A60 B2 )
93 25.4 A9-B34 ( A9 B34 )
94 25.4 A25-B8 ( A25 B8 )
96 25.4 A96-B17 ( A96 B17 )