A=Drosophilapseudoobscura.Q28WW7, B=Caenorhabditiselegans.G5EG86, Threshold for similarity =30, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 45.5 A96-B4 ( A96 B4 )
2 44.6 A96-B3 ( A96 B3 )
3 42.3 A89-B2 ( A89 B2 )
4 41.4 A62-B2 ( A62 B2 )
5 41.1 A39-B2 ( A39 B2 )
6 41.1 A62-B3 ( A62 B3 )
7 40.4 A67-B2 ( A67 B2 )
8 39.7 A51-B2 ( A51 B2 )
9 38.0 A25-B12 ( A25 B12 )
10 37.5 A51-B3 ( A51 B3 )
11 37.5 A98-B5 ( A98 B5 )
12 37.0 A27-B14 ( A27 B14 )
13 36.4 A111-B1 ( A111 B1 )
14 36.4 A113-B2 ( A113 B2 )
15 36.4 A113-B3 ( A113 B3 )
16 36.2 A72-B2 ( A72 B2 )
17 36.2 A83-B2 ( A83 B2 )
18 36.1 A41-B3 ( A41 B3 )
19 36.0 A98-B15 ( A98 B15 )
20 35.8 A21-B1 ( A21 B1 )
21 35.8 A78-B2 A94-B18 ( A78 B2 A94 B18 )
22 35.2 A39-B10 ( A39 B10 )
23 35.0 A2-B12 ( A2 B12 )
24 34.6 A109-B3 ( A109 B3 )
25 34.5 A72-B15 ( A72 B15 )
26 34.5 A83-B15 ( A83 B15 )
27 34.5 A94-B2 ( A94 B2 )
28 33.8 A96-B5 ( A96 B5 )
29 33.3 A13-B11 ( A13 B11 )
30 33.3 A27-B34 ( A27 B34 )
31 33.3 A109-B12 ( A109 B12 )
32 32.8 A23-B6 ( A23 B6 )
33 32.8 A27-B35 ( A27 B35 )
34 32.8 A45-B2 ( A45 B2 )
35 32.8 A56-B2 ( A56 B2 )
36 32.7 A120-B17 ( A120 B17 )
37 32.1 A10-B29 ( A10 B29 )
38 32.1 A49-B1 ( A49 B1 )
39 32.1 A60-B1 ( A60 B1 )
40 32.0 A16-B12 ( A16 B12 )
41 31.8 A39-B3 ( A39 B3 )
42 31.6 A10-B30 ( A10 B30 )
43 31.6 A23-B7 ( A23 B7 )
44 31.5 A35-B2 ( A35 B2 )
45 31.5 A74-B4 ( A74 B4 )
46 31.5 A85-B4 ( A85 B4 )
47 31.5 A118-B22 ( A118 B22 )
48 31.4 A109-B7 ( A109 B7 )
49 31.2 A94-B18 ( A94 B18 )
50 30.9 A41-B12 ( A41 B12 )
51 30.8 A2-B13 ( A2 B13 )
52 30.6 A62-B4 ( A62 B4 )
53 30.5 A107-B12 ( A107 B12 )
54 30.4 A16-B13 ( A16 B13 )
55 30.4 A74-B3 ( A74 B3 )
56 30.4 A85-B3 ( A85 B3 )
57 30.2 A76-B14 ( A76 B14 )