A=Drosophilapseudoobscura.Q28WW7, B=Caenorhabditiselegans.G5EG86, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 50.9 A40-B3 ( A40 B3 )
2 49.1 A97-B5 ( A97 B5 )
3 46.4 A97-B4 ( A97 B4 )
4 43.6 A114-B3 ( A114 B3 )
5 42.4 A55-B32 ( A55 B32 )
6 42.4 A63-B3 ( A63 B3 )
7 42.1 A78-B2 A102-B26 ( A78 B2 A102 B26 )
8 42.1 A91-B13 ( A91 B13 )
9 41.9 A40-B2 ( A40 B2 )
10 41.8 A72-B14 ( A72 B14 )
11 41.8 A83-B14 ( A83 B14 )
12 41.5 A21-B1 ( A21 B1 )
13 41.4 A40-B12 ( A40 B12 )
14 41.1 A50-B2 ( A50 B2 )
15 41.1 A61-B2 ( A61 B2 )
16 41.0 A95-B3 ( A95 B3 )
17 40.7 A74-B16 ( A74 B16 )
18 40.7 A85-B16 ( A85 B16 )
19 40.5 A74-B3 A103-B32 ( A74 B3 A103 B32 )
20 40.5 A88-B1 A98-B11 ( A88 B1 A98 B11 )
21 40.4 A50-B15 ( A50 B15 )
22 40.1 A72-B1 A103-B32 ( A72 B1 A103 B32 )
23 40.0 A74-B17 ( A74 B17 )
24 40.0 A85-B17 ( A85 B17 )
25 39.7 A38-B35 ( A38 B35 )
26 39.7 A52-B3 ( A52 B3 )
27 39.7 A97-B17 ( A97 B17 )
28 39.6 A40-B4 A52-B16 ( A40 B4 A52 B16 )
29 39.5 A57-B4 A68-B15 ( A57 B4 A68 B15 )
30 39.3 A25-B12 ( A25 B12 )
31 39.3 A55-B26 ( A55 B26 )
32 39.3 A74-B4 ( A74 B4 )
33 39.0 A102-B26 ( A102 B26 )
34 38.9 A35-B35 ( A35 B35 )
35 38.8 A46-B4 A57-B15 ( A46 B4 A57 B15 )
36 38.8 A68-B4 A79-B15 ( A68 B4 A79 B15 )
37 38.8 A68-B3 A93-B28 ( A68 B3 A93 B28 )
38 38.7 A46-B3 ( A46 B3 )
39 38.7 A57-B3 ( A57 B3 )
40 38.6 A68-B15 ( A68 B15 )
41 38.6 A85-B3 ( A85 B3 )
42 38.5 A110-B13 ( A110 B13 )
43 38.3 A63-B4 ( A63 B4 )
44 38.2 A27-B33 ( A27 B33 )
45 38.1 A93-B19 ( A93 B19 )
46 38.0 A106-B4 A111-B9 ( A106 B4 A111 B9 )
47 37.9 A7-B35 ( A7 B35 )
48 37.9 A38-B1 ( A38 B1 )
49 37.9 A50-B1 ( A50 B1 )
50 37.9 A61-B1 ( A61 B1 )
51 37.9 A76-B25 ( A76 B25 )
52 37.9 A83-B1 ( A83 B1 )
53 37.9 A80-B4 A102-B26 ( A80 B4 A102 B26 )
54 37.7 A16-B13 A38-B35 ( A16 B13 A38 B35 )
55 37.5 A42-B32 ( A42 B32 )
56 37.5 A52-B16 ( A52 B16 )
57 37.3 A66-B1 A93-B28 ( A66 B1 A93 B28 )
58 37.3 A70-B5 A93-B28 ( A70 B5 A93 B28 )
59 37.3 A78-B3 A94-B19 A103-B28 ( A78 B3 A94 B19 A103 B28 )
60 37.3 A21-B20 A29-B28 ( A21 B20 A29 B28 )
61 37.3 A23-B23 A35-B35 ( A23 B23 A35 B35 )
62 37.3 A29-B28 ( A29 B28 )
63 37.3 A46-B15 ( A46 B15 )
64 37.3 A52-B4 ( A52 B4 )
65 37.3 A57-B15 ( A57 B15 )
66 37.2 A85-B4 A108-B27 ( A85 B4 A108 B27 )
67 37.0 A27-B14 ( A27 B14 )
68 37.0 A40-B11 A53-B24 ( A40 B11 A53 B24 )
69 36.8 A44-B1 ( A44 B1 )
70 36.8 A93-B28 ( A93 B28 )
71 36.7 A13-B11 A30-B28 ( A13 B11 A30 B28 )
72 36.7 A106-B9 ( A106 B9 )
73 36.5 A9-B14 A24-B29 ( A9 B14 A24 B29 )
74 36.4 A112-B2 ( A112 B2 )
75 36.2 A11-B26 ( A11 B26 )
76 36.2 A72-B2 ( A72 B2 )
77 36.2 A118-B23 ( A118 B23 )
78 36.1 A91-B17 ( A91 B17 )
79 35.8 A9-B25 ( A9 B25 )
80 35.8 A16-B12 ( A16 B12 )
81 35.7 A31-B10 ( A31 B10 )
82 35.7 A38-B14 ( A38 B14 )
83 35.7 A83-B2 A108-B27 ( A83 B2 A108 B27 )
84 35.6 A23-B5 A30-B12 A39-B21 ( A23 B5 A30 B12 A39 B21 )
85 35.6 A29-B18 ( A29 B18 )
86 35.5 A74-B13 ( A74 B13 )
87 35.5 A85-B13 ( A85 B13 )
88 35.4 A42-B5 ( A42 B5 )
89 35.4 A95-B4 ( A95 B4 )
90 35.2 A108-B27 ( A108 B27 )