A=Mouse.Q8VCY6, B=Saccharomyces.Q02354, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity , Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
2 50.9 A5-B5 A10-B10 A15-B15 ( A5 B5 A10 B10 A15 B15 )
3 50.5 A1-B1 A6-B6 A11-B11 A16-B16 ( A1 B1 A6 B6 A11 B11 A16 B16 )
6 46.5 A3-B3 A8-B8 A13-B13 A18-B18 ( A3 B3 A8 B8 A13 B13 A18 B18 )
7 46.2 A5-B18 ( A5 B18 )
9 45.3 A7-B7 A12-B12 A17-B17 ( A7 B7 A12 B12 A17 B17 )
14 40.4 A38-B16 ( A38 B16 )
29 36.6 A7-B6 A16-B15 ( A7 B6 A16 B15 )
32 36.0 A38-B12 ( A38 B12 )