A=Drosophilamelanogaster.Q9W157, B=Drosophilapseudoobscura.Q28WW7, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no.
Average Score
Fragment alignment
Fasta links
1
260.2
A6-B8
A11-B13
A16-B18
A31-B33
A38-B40
A66-B68
(
A6
B8
A11
B13
A16
B18
A31
B33
A38
B40
A66
B68
)
2
258.2
A4-B6
A9-B11
A14-B16
A31-B33
A38-B40
A66-B68
(
A4
B6
A9
B11
A14
B16
A31
B33
A38
B40
A66
B68
)
3
246.5
A45-B73
A56-B84
A61-B89
A66-B94
A84-B112
A89-B117
(
A45
B73
A56
B84
A61
B89
A66
B94
A84
B112
A89
B117
)
4
242.9
A45-B72
A53-B80
A58-B85
A63-B90
A85-B112
A90-B117
(
A45
B72
A53
B80
A58
B85
A63
B90
A85
B112
A90
B117
)
5
238.5
A8-B11
A13-B16
A18-B21
A29-B32
A34-B37
A75-B78
(
A8
B11
A13
B16
A18
B21
A29
B32
A34
B37
A75
B78
)
6
234.2
A16-B20
A21-B25
A29-B33
A45-B49
A53-B57
A74-B78
(
A16
B20
A21
B25
A29
B33
A45
B49
A53
B57
A74
B78
)
7
234
A2-B3
A7-B8
A12-B13
A57-B58
A65-B66
A78-B79
(
A2
B3
A7
B8
A12
B13
A57
B58
A65
B66
A78
B79
)
8
232.2
A38-B32
A45-B39
A56-B50
A61-B55
A67-B61
A74-B68
(
A38
B32
A45
B39
A56
B50
A61
B55
A67
B61
A74
B68
)
9
225.3
A22-B27
A45-B50
A55-B60
A63-B68
A68-B73
A74-B79
(
A22
B27
A45
B50
A55
B60
A63
B68
A68
B73
A74
B79
)
10
222.7
A10-B12
A15-B17
A31-B33
A38-B40
A66-B68
(
A10
B12
A15
B17
A31
B33
A38
B40
A66
B68
)
11
222.4
A20-B25
A45-B50
A55-B60
A63-B68
A68-B73
A74-B79
(
A20
B25
A45
B50
A55
B60
A63
B68
A68
B73
A74
B79
)
12
214.6
A10-B13
A15-B18
A29-B32
A34-B37
A75-B78
(
A10
B13
A15
B18
A29
B32
A34
B37
A75
B78
)
13
207.7
A57-B85
A62-B90
A67-B95
A84-B112
A89-B117
(
A57
B85
A62
B90
A67
B95
A84
B112
A89
B117
)
14
207
A4-B5
A9-B10
A57-B58
A65-B66
A78-B79
(
A4
B5
A9
B10
A57
B58
A65
B66
A78
B79
)
15
207
A8-B10
A13-B15
A31-B33
A38-B40
A66-B68
(
A8
B10
A13
B15
A31
B33
A38
B40
A66
B68
)
16
206.2
A6-B7
A11-B12
A57-B58
A65-B66
A78-B79
(
A6
B7
A11
B12
A57
B58
A65
B66
A78
B79
)
17
205.1
A12-B14
A17-B19
A31-B33
A38-B40
A66-B68
(
A12
B14
A17
B19
A31
B33
A38
B40
A66
B68
)
18
202.1
A12-B15
A17-B20
A29-B32
A34-B37
A75-B78
(
A12
B15
A17
B20
A29
B32
A34
B37
A75
B78
)
19
202
A8-B9
A13-B14
A57-B58
A65-B66
A78-B79
(
A8
B9
A13
B14
A57
B58
A65
B66
A78
B79
)
20
196.3
A47-B68
A52-B73
A57-B78
A68-B89
A73-B94
(
A47
B68
A52
B73
A57
B78
A68
B89
A73
B94
)
21
194.6
A47-B41
A56-B50
A61-B55
A67-B61
A74-B68
(
A47
B41
A56
B50
A61
B55
A67
B61
A74
B68
)
23
192.3
A22-B26
A29-B33
A45-B49
A53-B57
A74-B78
(
A22
B26
A29
B33
A45
B49
A53
B57
A74
B78
)
24
191.1
A47-B63
A53-B69
A58-B74
A63-B79
A68-B84
(
A47
B63
A53
B69
A58
B74
A63
B79
A68
B84
)
25
190.3
A20-B24
A29-B33
A45-B49
A53-B57
A74-B78
(
A20
B24
A29
B33
A45
B49
A53
B57
A74
B78
)
26
187.5
A45-B66
A50-B71
A55-B76
A68-B89
A73-B94
(
A45
B66
A50
B71
A55
B76
A68
B89
A73
B94
)
28
171.4
A63-B91
A68-B96
A84-B112
A89-B117
(
A63
B91
A68
B96
A84
B112
A89
B117
)
29
167.8
A10-B11
A57-B58
A65-B66
A78-B79
(
A10
B11
A57
B58
A65
B66
A78
B79
)
30
166.6
A14-B17
A29-B32
A34-B37
A75-B78
(
A14
B17
A29
B32
A34
B37
A75
B78
)
32
164.7
A57-B84
A63-B90
A85-B112
A90-B117
(
A57
B84
A63
B90
A85
B112
A90
B117
)
33
164.5
A59-B86
A64-B91
A85-B112
A90-B117
(
A59
B86
A64
B91
A85
B112
A90
B117
)
34
164.4
A45-B44
A56-B55
A68-B67
A73-B72
(
A45
B44
A56
B55
A68
B67
A73
B72
)
35
164.4
A16-B19
A29-B32
A34-B37
A75-B78
(
A16
B19
A29
B32
A34
B37
A75
B78
)
38
158.7
A47-B46
A56-B55
A68-B67
A73-B72
(
A47
B46
A56
B55
A68
B67
A73
B72
)
40
157.6
A45-B55
A55-B65
A68-B78
A73-B83
(
A45
B55
A55
B65
A68
B78
A73
B83
)
41
157
A57-B40
A63-B46
A68-B51
A74-B57
(
A57
B40
A63
B46
A68
B51
A74
B57
)
42
156.3
A31-B35
A45-B49
A53-B57
A74-B78
(
A31
B35
A45
B49
A53
B57
A74
B78
)
43
156.1
A45-B67
A55-B77
A61-B83
A66-B88
(
A45
B67
A55
B77
A61
B83
A66
B88
)
44
155.5
A45-B77
A50-B82
A56-B88
A69-B101
(
A45
B77
A50
B82
A56
B88
A69
B101
)
47
151.9
A47-B57
A55-B65
A68-B78
A73-B83
(
A47
B57
A55
B65
A68
B78
A73
B83
)
48
151
A57-B62
A63-B68
A68-B73
A74-B79
(
A57
B62
A63
B68
A68
B73
A74
B79
)
50
150.8
A47-B79
A52-B84
A57-B89
A69-B101
(
A47
B79
A52
B84
A57
B89
A69
B101
)
51
150.6
A45-B45
A55-B55
A61-B61
A66-B66
(
A45
B45
A55
B55
A61
B61
A66
B66
)
53
149
A45-B56
A55-B66
A61-B72
A66-B77
(
A45
B56
A55
B66
A61
B72
A66
B77
)
55
135.4
A57-B46
A62-B51
A67-B56
(
A57
B46
A62
B51
A67
B56
)
56
134.1
A57-B68
A62-B73
A67-B78
(
A57
B68
A62
B73
A67
B78
)
57
132.5
A57-B79
A62-B84
A67-B89
(
A57
B79
A62
B84
A67
B89
)
58
132
A69-B97
A84-B112
A89-B117
(
A69
B97
A84
B112
A89
B117
)
60
131.7
A57-B57
A62-B62
A67-B67
(
A57
B57
A62
B62
A67
B67
)
61
128
A31-B34
A38-B41
A75-B78
(
A31
B34
A38
B41
A75
B78
)
63
124.1
A33-B36
A38-B41
A75-B78
(
A33
B36
A38
B41
A75
B78
)
65
122.1
A57-B56
A68-B67
A73-B72
(
A57
B56
A68
B67
A73
B72
)
66
122.1
A57-B45
A68-B56
A75-B63
(
A57
B45
A68
B56
A75
B63
)
67
120.5
A57-B67
A68-B78
A73-B83
(
A57
B67
A68
B78
A73
B83
)
69
119
A57-B74
A63-B80
A68-B85
(
A57
B74
A63
B80
A68
B85
)
70
119
A61-B40
A66-B45
A79-B58
(
A61
B40
A66
B45
A79
B58
)
73
118.1
A57-B51
A63-B57
A74-B68
(
A57
B51
A63
B57
A74
B68
)
74
117.2
A61-B73
A66-B78
A78-B90
(
A61
B73
A66
B78
A78
B90
)
75
116.6
A87-B114
A92-B119
(
A87
B114
A92
B119
)
76
116.3
A61-B38
A68-B45
A73-B50
(
A61
B38
A68
B45
A73
B50
)
77
116.2
A59-B80
A68-B89
A73-B94
(
A59
B80
A68
B89
A73
B94
)
79
115.3
A57-B47
A66-B56
A78-B68
(
A57
B47
A66
B56
A78
B68
)
80
114.5
A45-B60
A53-B68
A74-B89
(
A45
B60
A53
B68
A74
B89
)
82
114.5
A57-B69
A65-B77
A78-B90
(
A57
B69
A65
B77
A78
B90
)
84
114.4
A57-B73
A63-B79
A68-B84
(
A57
B73
A63
B79
A68
B84
)
85
114.3
A57-B80
A65-B88
A70-B93
(
A57
B80
A65
B88
A70
B93
)
86
114.2
A38-B58
A74-B94
A83-B103
(
A38
B58
A74
B94
A83
B103
)
87
114
A55-B44
A61-B50
A66-B55
(
A55
B44
A61
B50
A66
B55
)
91
113.4
A33-B35
A38-B40
A66-B68
(
A33
B35
A38
B40
A66
B68
)
93
113.4
A59-B69
A68-B78
A73-B83
(
A59
B69
A68
B78
A73
B83
)
94
113.1
A63-B40
A68-B45
A73-B50
(
A63
B40
A68
B45
A73
B50
)
97
112.7
A61-B44
A67-B50
A74-B57
(
A61
B44
A67
B50
A74
B57
)
98
112.2
A59-B47
A68-B56
A75-B63
(
A59
B47
A68
B56
A75
B63
)
99
112.2
A59-B58
A68-B67
A73-B72
(
A59
B58
A68
B67
A73
B72
)
102
110.8
A57-B83
A86-B112
A93-B119
(
A57
B83
A86
B112
A93
B119
)
103
108.9
A59-B53
A67-B61
A74-B68
(
A59
B53
A67
B61
A74
B68
)
104
108.8
A87-B115
A92-B120
(
A87
B115
A92
B120
)
105
97.2
A63-B85
A68-B90
(
A63
B85
A68
B90
)
106
92.7
A85-B113
A90-B118
(
A85
B113
A90
B118
)
107
91.5
A63-B52
A68-B57
(
A63
B52
A68
B57
)
109
88.2
A63-B74
A68-B79
(
A63
B74
A68
B79
)
110
87.7
A63-B41
A68-B46
(
A63
B41
A68
B46
)
111
87.4
A61-B45
A66-B50
(
A61
B45
A66
B50
)
112
87.3
A67-B79
A78-B90
(
A67
B79
A78
B90
)
113
86.7
A61-B67
A66-B72
(
A61
B67
A66
B72
)
114
86.7
A61-B78
A66-B83
(
A61
B78
A66
B83
)
115
86.4
A63-B63
A68-B68
(
A63
B63
A68
B68
)
116
85.5
A69-B90
A74-B95
(
A69
B90
A74
B95
)
117
85.3
A67-B68
A78-B79
(
A67
B68
A78
B79
)
118
84.4
A38-B47
A74-B83
(
A38
B47
A74
B83
)
119
83.7
A67-B46
A79-B58
(
A67
B46
A79
B58
)
120
83.5
A61-B56
A66-B61
(
A61
B56
A66
B61
)
121
83.3
A61-B39
A66-B44
(
A61
B39
A66
B44
)
122
83.2
A87-B113
A93-B119
(
A87
B113
A93
B119
)
123
82.9
A63-B47
A68-B52
(
A63
B47
A68
B52
)
124
82.8
A63-B58
A68-B63
(
A63
B58
A68
B63
)
125
82.8
A63-B69
A68-B74
(
A63
B69
A68
B74
)
127
81.7
A67-B57
A78-B68
(
A67
B57
A78
B68
)
128
81.7
A67-B85
A79-B97
(
A67
B85
A79
B97
)
129
81.6
A57-B50
A74-B67
(
A57
B50
A74
B67
)
130
81.6
A57-B61
A74-B78
(
A57
B61
A74
B78
)
131
80.1
A65-B49
A70-B54
(
A65
B49
A70
B54
)
132
79.9
A61-B84
A66-B89
(
A61
B84
A66
B89
)
133
79.3
A57-B39
A74-B56
(
A57
B39
A74
B56
)
134
79.1
A47-B90
A52-B95
(
A47
B90
A52
B95
)
135
79.1
A50-B21
A74-B45
(
A50
B21
A74
B45
)
136
78.5
A59-B48
A66-B55
(
A59
B48
A66
B55
)
142
77.7
A65-B71
A70-B76
(
A65
B71
A70
B76
)
143
77.6
A67-B96
A85-B114
(
A67
B96
A85
B114
)
144
77.5
A45-B88
A50-B93
(
A45
B88
A50
B93
)
145
77.4
A52-B28
A73-B49
(
A52
B28
A73
B49
)
147
76.4
A75-B95
A83-B103
(
A75
B95
A83
B103
)
148
76.2
A69-B81
A78-B90
(
A69
B81
A78
B90
)
150
75.6
A45-B78
A55-B88
(
A45
B78
A55
B88
)
151
74.9
A75-B83
A89-B97
(
A75
B83
A89
B97
)
152
74.6
A59-B75
A68-B84
(
A59
B75
A68
B84
)
153
74.4
A38-B80
A76-B118
(
A38
B80
A76
B118
)
155
74.3
A59-B91
A69-B101
(
A59
B91
A69
B101
)
156
74.3
A67-B74
A79-B86
(
A67
B74
A79
B86
)
157
74.2
A69-B70
A78-B79
(
A69
B70
A78
B79
)
159
73.8
A57-B72
A74-B89
(
A57
B72
A74
B89
)
160
73.8
A59-B37
A65-B43
(
A59
B37
A65
B43
)
161
73.4
A41-B21
A67-B47
(
A41
B21
A67
B47
)
164
73.2
A65-B87
A70-B92
(
A65
B87
A70
B92
)
166
73.1
A45-B83
A55-B93
(
A45
B83
A55
B93
)
167
73
A69-B48
A79-B58
(
A69
B48
A79
B58
)
169
72.8
A45-B84
A55-B94
(
A45
B84
A55
B94
)
171
71
A69-B59
A78-B68
(
A69
B59
A78
B68
)
172
62.5
A93-B120
(
A93
B120
)
173
59.3
A67-B90
(
A67
B90
)
174
52.8
A57-B95
(
A57
B95
)
175
50
A69-B91
(
A69
B91
)
176
49.1
A59-B97
(
A59
B97
)
177
48.1
A67-B45
(
A67
B45
)
179
47.4
A57-B96
(
A57
B96
)
180
47.2
A75-B96
(
A75
B96
)
181
47.1
A67-B73
(
A67
B73
)
182
47.1
A67-B84
(
A67
B84
)
183
47.1
A75-B46
(
A75
B46
)
184
47.1
A75-B57
(
A75
B57
)
185
47.1
A75-B68
(
A75
B68
)
186
47.1
A75-B79
(
A75
B79
)
190
46.3
A69-B92
(
A69
B92
)
191
45.3
A57-B90
(
A57
B90
)
193
45.1
A33-B67
(
A33
B67
)
194
45.1
A33-B78
(
A33
B78
)
195
45.1
A67-B51
(
A67
B51
)
196
44.4
A65-B60
(
A65
B60
)
197
44.4
A69-B47
(
A69
B47
)
198
44.4
A69-B58
(
A69
B58
)
200
44
A47-B96
(
A47
B96
)
201
43.8
A67-B91
(
A67
B91
)
202
43.1
A33-B89
(
A33
B89
)
203
43.1
A36-B110
(
A36
B110
)
204
43.1
A67-B62
(
A67
B62
)
205
42.9
A89-B116
(
A89
B116
)
207
42.1
A69-B75
(
A69
B75
)
208
42.1
A69-B86
(
A69
B86
)
210
41.5
A77-B98
(
A77
B98
)
211
41.2
A65-B82
(
A65
B82
)
212
41.2
A75-B90
(
A75
B90
)
213
41.1
A69-B69
(
A69
B69
)
214
41.1
A69-B80
(
A69
B80
)
215
40.6
A75-B50
(
A75
B50
)
216
40.4
A77-B36
(
A77
B36
)
217
40
A45-B94
(
A45
B94
)
220
39.2
A79-B91
(
A79
B91
)
221
38.9
A6-B87
(
A6
B87
)
222
38.9
A59-B114
(
A59
B114
)
223
38.9
A61-B35
(
A61
B35
)
224
38.9
A75-B51
(
A75
B51
)
225
38.9
A75-B62
(
A75
B62
)
226
38.9
A91-B119
(
A91
B119
)
229
38.5
A75-B40
(
A75
B40
)
231
38.2
A38-B91
(
A38
B91
)
234
37.5
A67-B69
(
A67
B69
)
235
37.5
A67-B80
(
A67
B80
)
236
37.5
A69-B53
(
A69
B53
)
238
37.5
A75-B61
(
A75
B61
)
240
37.5
A75-B73
(
A75
B73
)
241
37.5
A75-B84
(
A75
B84
)
242
37.5
A91-B118
(
A91
B118
)
243
37.3
A14-B61
(
A14
B61
)
246
37.3
A75-B45
(
A75
B45
)
247
37.3
A75-B56
(
A75
B56
)
248
37.3
A79-B47
(
A79
B47
)
250
37.3
A79-B69
(
A79
B69
)
251
37.3
A79-B80
(
A79
B80
)
252
37
A71-B40
(
A71
B40
)
253
37
A75-B74
(
A75
B74
)
254
37
A75-B85
(
A75
B85
)
255
37
A79-B75
(
A79
B75
)
257
36.5
A8-B96
(
A8
B96
)
258
36.4
A38-B69
(
A38
B69
)
260
36.4
A67-B58
(
A67
B58
)
261
36.4
A75-B72
(
A75
B72
)
262
36.2
A69-B64
(
A69
B64
)
264
36.2
A73-B60
(
A73
B60
)
265
36.1
A47-B91
(
A47
B91
)
266
36.1
A75-B67
(
A75
B67
)
269
36
A85-B19
(
A85
B19
)
271
35.8
A59-B92
(
A59
B92
)
272
35.7
A38-B52
(
A38
B52
)
273
35.7
A45-B89
(
A45
B89
)
274
35.7
A75-B52
(
A75
B52
)
275
35.6
A75-B69
(
A75
B69
)
276
35.6
A75-B80
(
A75
B80
)