A=Drosophilapseudoobscura.Q28WW7, B=Ustilagomaydis.Q8NJ74, Threshold for similarity =35, length of fragment = 30, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 167.8 A18-B7 A23-B12 A40-B29 A111-B100 ( A18 B7 A23 B12 A40 B29 A111 B100 )
2 153.1 A18-B39 A49-B70 A68-B89 A78-B99 ( A18 B39 A49 B70 A68 B89 A78 B99 )
3 151.4 A1-B62 A9-B70 A22-B83 A41-B102 ( A1 B62 A9 B70 A22 B83 A41 B102 )
4 124.5 A22-B11 A40-B29 A111-B100 ( A22 B11 A40 B29 A111 B100 )
5 119.4 A7-B37 A22-B52 A73-B103 ( A7 B37 A22 B52 A73 B103 )
7 116.6 A57-B29 A67-B39 A94-B66 ( A57 B29 A67 B39 A94 B66 )
8 116.2 A35-B67 A55-B87 A67-B99 ( A35 B67 A55 B87 A67 B99 )
10 115.4 A18-B11 A77-B70 A91-B84 ( A18 B11 A77 B70 A91 B84 )
11 114.9 A86-B9 A102-B25 A109-B32 ( A86 B9 A102 B25 A109 B32 )
12 113.6 A16-B25 A79-B88 A86-B95 ( A16 B25 A79 B88 A86 B95 )
13 113.4 A11-B22 A20-B31 A32-B43 ( A11 B22 A20 B31 A32 B43 )
14 113.3 A53-B30 A92-B69 A105-B82 ( A53 B30 A92 B69 A105 B82 )
15 111.9 A45-B18 A57-B30 A90-B63 ( A45 B18 A57 B30 A90 B63 )
16 110.3 A59-B31 A67-B39 A94-B66 ( A59 B31 A67 B39 A94 B66 )
17 109.4 A20-B3 A43-B26 A48-B31 ( A20 B3 A43 B26 A48 B31 )
18 93.5 A41-B30 A111-B100 ( A41 B30 A111 B100 )
19 83.8 A57-B89 A67-B99 ( A57 B89 A67 B99 )
20 82.2 A68-B29 A96-B57 ( A68 B29 A96 B57 )
22 81.7 A7-B25 A52-B70 ( A7 B25 A52 B70 )
24 80.8 A26-B69 A44-B87 ( A26 B69 A44 B87 )
25 79.4 A29-B10 A112-B93 ( A29 B10 A112 B93 )
26 79.3 A109-B17 A116-B24 ( A109 B17 A116 B24 )
27 78.8 A41-B68 A75-B102 ( A41 B68 A75 B102 )
28 78.8 A70-B31 A96-B57 ( A70 B31 A96 B57 )
30 78.4 A18-B32 A82-B96 ( A18 B32 A82 B96 )
31 78.4 A37-B74 A59-B96 ( A37 B74 A59 B96 )
32 77.9 A79-B89 A89-B99 ( A79 B89 A89 B99 )
36 76.1 A68-B88 A75-B95 ( A68 B88 A75 B95 )
37 76.1 A75-B9 A96-B30 ( A75 B9 A96 B30 )
40 74.6 A33-B39 A55-B61 ( A33 B39 A55 B61 )
41 74.3 A35-B19 A46-B30 ( A35 B19 A46 B30 )
42 73.4 A5-B68 A32-B95 ( A5 B68 A32 B95 )
45 72.8 A57-B9 A65-B17 ( A57 B9 A65 B17 )
46 72.8 A95-B32 A115-B52 ( A95 B32 A115 B52 )
47 72.6 A55-B70 A81-B96 ( A55 B70 A81 B96 )
48 72.2 A33-B37 A65-B69 ( A33 B37 A65 B69 )
49 72.2 A53-B24 A93-B64 ( A53 B24 A93 B64 )
50 72.2 A99-B52 A113-B66 ( A99 B52 A113 B66 )
51 70.8 A3-B52 A53-B102 ( A3 B52 A53 B102 )
52 70.8 A97-B15 A114-B32 ( A97 B15 A114 B32 )
53 56.7 A91-B30 ( A91 B30 )
54 53.1 A47-B30 ( A47 B30 )
55 50 A53-B71 ( A53 B71 )
56 46.9 A119-B17 ( A119 B17 )
57 46.7 A79-B29 ( A79 B29 )
58 46.7 A109-B85 ( A109 B85 )
59 46.7 A115-B16 ( A115 B16 )
60 45.5 A53-B31 ( A53 B31 )
61 45.5 A64-B31 ( A64 B31 )
62 45.2 A22-B8 ( A22 B8 )
63 44.1 A97-B30 ( A97 B30 )
64 43.3 A81-B31 ( A81 B31 )
65 43.3 A107-B83 ( A107 B83 )
66 43.3 A111-B39 ( A111 B39 )
68 42.9 A75-B30 ( A75 B30 )
69 42.9 A86-B30 ( A86 B30 )
70 42.4 A51-B29 ( A51 B29 )
71 42.4 A62-B29 ( A62 B29 )
72 42.4 A113-B94 ( A113 B94 )
73 41.9 A24-B82 ( A24 B82 )
74 41.9 A31-B38 ( A31 B38 )
75 41.9 A39-B52 ( A39 B52 )
76 41.9 A93-B86 ( A93 B86 )
77 41.2 A95-B67 ( A95 B67 )
78 40.6 A16-B38 ( A16 B38 )
79 40.6 A41-B70 ( A41 B70 )
80 40.6 A97-B1 ( A97 B1 )
81 40 A24-B6 ( A24 B6 )
82 40 A29-B53 ( A29 B53 )
83 40 A31-B6 ( A31 B6 )
84 40 A37-B103 ( A37 B103 )
85 40 A75-B31 ( A75 B31 )
87 40 A86-B31 ( A86 B31 )
89 40 A113-B15 ( A113 B15 )
90 39.4 A9-B83 ( A9 B83 )
91 39.4 A16-B91 ( A16 B91 )
92 39.4 A115-B68 ( A115 B68 )
93 38.9 A9-B104 ( A9 B104 )
94 38.9 A109-B33 ( A109 B33 )
95 38.7 A1-B84 ( A1 B84 )
96 38.7 A37-B70 ( A37 B70 )
98 38.7 A95-B97 ( A95 B97 )
99 38.7 A97-B9 ( A97 B9 )
100 38.7 A97-B85 ( A97 B85 )
102 38.2 A9-B105 ( A9 B105 )
104 38.2 A113-B53 ( A113 B53 )
105 37.8 A64-B30 ( A64 B30 )
106 37.5 A5-B85 ( A5 B85 )
107 37.5 A7-B53 ( A7 B53 )
108 37.5 A22-B64 ( A22 B64 )
109 37.5 A45-B88 ( A45 B88 )
110 36.7 A11-B19 ( A11 B19 )
111 36.7 A24-B10 ( A24 B10 )
112 36.7 A66-B70 ( A66 B70 )
114 36.7 A84-B103 ( A84 B103 )
117 36.7 A97-B69 ( A97 B69 )
119 36.4 A16-B39 ( A16 B39 )
120 36.4 A18-B68 ( A18 B68 )
121 36.4 A37-B81 ( A37 B81 )
123 36.1 A97-B31 ( A97 B31 )
124 35.5 A14-B66 ( A14 B66 )
125 35.5 A22-B4 ( A22 B4 )
126 35.5 A22-B20 ( A22 B20 )
127 35.5 A41-B10 ( A41 B10 )
129 35.5 A57-B51 ( A57 B51 )
130 35.5 A66-B61 ( A66 B61 )
132 35.5 A86-B102 ( A86 B102 )
133 35.5 A89-B3 ( A89 B3 )
134 35.5 A97-B94 ( A97 B94 )
135 35.5 A99-B18 ( A99 B18 )
138 35.3 A68-B9 ( A68 B9 )
139 35.3 A79-B9 ( A79 B9 )
140 35.3 A109-B34 ( A109 B34 )
141 35.3 A111-B79 ( A111 B79 )
143 35.1 A70-B96 ( A70 B96 )