A=Drosophilapseudoobscura.Q28WW7, B=Ustilagomaydis.Q8NJ74, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 47.1 A69-B30 ( A69 B30 )
2 47.1 A80-B30 ( A80 B30 )
3 45.1 A78-B28 ( A78 B28 )
4 43.4 A47-B30 ( A47 B30 )
5 43.4 A51-B29 ( A51 B29 )
6 43.4 A62-B29 ( A62 B29 )
7 43.1 A39-B28 ( A39 B28 )
8 43.1 A89-B28 ( A89 B28 )
9 43.1 A91-B84 ( A91 B84 )
10 42.0 A91-B30 ( A91 B30 )
11 42.0 A108-B84 ( A108 B84 )
12 41.8 A74-B30 ( A74 B30 )
13 41.8 A85-B30 ( A85 B30 )
14 41.2 A41-B30 ( A41 B30 )
15 41.0 A16-B5 A21-B10 A39-B28 ( A16 B5 A21 B10 A39 B28 )
16 40.7 A20-B62 ( A20 B62 )
17 40.4 A99-B15 ( A99 B15 )
18 40.0 A20-B3 A44-B27 ( A20 B3 A44 B27 )
19 40.0 A67-B28 ( A67 B28 )
20 40.0 A106-B82 ( A106 B82 )
21 38.9 A97-B30 ( A97 B30 )
22 38.5 A45-B28 ( A45 B28 )
23 38.5 A53-B85 ( A53 B85 )
24 38.5 A57-B29 ( A57 B29 )
25 38.5 A117-B49 ( A117 B49 )
26 38.3 A43-B86 ( A43 B86 )
27 38.2 A85-B29 ( A85 B29 )
28 38.0 A113-B14 ( A113 B14 )
29 37.7 A49-B27 ( A49 B27 )
30 37.7 A60-B27 ( A60 B27 )
31 37.5 A65-B85 ( A65 B85 )
32 37.3 A37-B74 ( A37 B74 )
33 37.3 A74-B29 A96-B51 ( A74 B29 A96 B51 )
34 37.1 A34-B1 A60-B27 ( A34 B1 A60 B27 )
35 37.0 A120-B5 ( A120 B5 )
36 36.8 A51-B28 ( A51 B28 )
37 36.8 A62-B28 ( A62 B28 )
38 36.5 A5-B85 ( A5 B85 )
39 36.5 A16-B38 ( A16 B38 )
40 36.5 A55-B87 ( A55 B87 )
41 36.5 A97-B1 ( A97 B1 )
42 36.4 A72-B28 ( A72 B28 )
43 36.4 A83-B28 ( A83 B28 )
44 36.0 A22-B4 ( A22 B4 )
45 35.9 A18-B39 A66-B87 ( A18 B39 A66 B87 )
46 35.8 A110-B101 ( A110 B101 )
47 35.7 A76-B85 ( A76 B85 )
48 35.7 A93-B66 ( A93 B66 )
49 35.3 A14-B66 ( A14 B66 )
50 35.2 A7-B36 ( A7 B36 )
51 35.2 A95-B28 ( A95 B28 )
52 35.2 A99-B79 ( A99 B79 )