A=Mouse.Q8VCY6, B=Saccharomyces.Q02354, Threshold for similarity =30, length of fragment = 50, sorted based on average %similarity , Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
2 50.9 A5-B5 A10-B10 A15-B15 ( A5 B5 A10 B10 A15 B15 )
3 50.5 A1-B1 A6-B6 A11-B11 A16-B16 ( A1 B1 A6 B6 A11 B11 A16 B16 )
6 46.5 A3-B3 A8-B8 A13-B13 A18-B18 ( A3 B3 A8 B8 A13 B13 A18 B18 )
7 46.2 A5-B18 ( A5 B18 )
9 45.3 A7-B7 A12-B12 A17-B17 ( A7 B7 A12 B12 A17 B17 )
15 40.4 A38-B16 ( A38 B16 )
21 38.1 A1-B2 A6-B7 A11-B12 A16-B17 ( A1 B2 A6 B7 A11 B12 A16 B17 )
23 37.7 A3-B4 A8-B9 A13-B14 ( A3 B4 A8 B9 A13 B14 )
26 37.2 A5-B6 A10-B11 A15-B16 ( A5 B6 A10 B11 A15 B16 )
28 36.2 A30-B8 A38-B16 ( A30 B8 A38 B16 )
33 34.8 A3-B2 A8-B7 A14-B13 ( A3 B2 A8 B7 A14 B13 )
36 34.5 A5-B17 ( A5 B17 )
41 34.0 A7-B8 A12-B13 A17-B18 ( A7 B8 A12 B13 A17 B18 )
43 33.5 A7-B6 A14-B13 ( A7 B6 A14 B13 )
45 33.3 A38-B12 A55-B29 ( A38 B12 A55 B29 )
50 32.8 A25-B12 ( A25 B12 )
55 32.3 A5-B19 A14-B28 A22-B36 ( A5 B19 A14 B28 A22 B36 )