A=Mouse.Q8VCY6, B=Saccharomyces.Q02354, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 54.7 A15-B15 ( A15 B15 )
2 50.9 A5-B5 A10-B10 A15-B15 ( A5 B5 A10 B10 A15 B15 )
3 50.5 A1-B1 A6-B6 A11-B11 A16-B16 ( A1 B1 A6 B6 A11 B11 A16 B16 )
4 50.5 A9-B9 A14-B14 ( A9 B9 A14 B14 )
5 47.2 A11-B11 A16-B16 ( A11 B11 A16 B16 )
6 46.5 A3-B3 A8-B8 A13-B13 A18-B18 ( A3 B3 A8 B8 A13 B13 A18 B18 )
7 46.2 A5-B18 ( A5 B18 )
8 45.6 A15-B16 ( A15 B16 )
9 45.3 A7-B7 A12-B12 A17-B17 ( A7 B7 A12 B12 A17 B17 )
10 41.5 A17-B17 ( A17 B17 )
11 40.7 A5-B36 ( A5 B36 )
12 40.5 A13-B13 A18-B18 ( A13 B13 A18 B18 )
13 40.4 A13-B14 ( A13 B14 )
14 40.4 A38-B16 ( A38 B16 )
15 40.4 A55-B30 ( A55 B30 )
16 40.0 A35-B32 ( A35 B32 )
17 39.6 A15-B4 ( A15 B4 )
18 39.5 A3-B2 A16-B15 ( A3 B2 A16 B15 )
19 39.5 A11-B12 A16-B17 ( A11 B12 A16 B17 )
20 39.4 A1-B2 A11-B12 A16-B17 ( A1 B2 A11 B12 A16 B17 )
21 39.4 A3-B4 A11-B12 A16-B17 ( A3 B4 A11 B12 A16 B17 )
22 39.3 A15-B30 ( A15 B30 )
23 39.3 A53-B4 ( A53 B4 )
24 38.2 A53-B3 ( A53 B3 )
25 37.9 A50-B17 ( A50 B17 )
26 37.5 A5-B37 ( A5 B37 )
27 37.3 A42-B21 ( A42 B21 )
28 36.9 A5-B4 A16-B15 ( A5 B4 A16 B15 )
29 36.6 A7-B6 A16-B15 ( A7 B6 A16 B15 )
30 36.5 A53-B28 ( A53 B28 )
31 36.2 A15-B29 ( A15 B29 )
32 36.0 A38-B12 ( A38 B12 )
33 35.1 A17-B18 ( A17 B18 )