A=Drosophilapseudoobscura.Q28WW7, B=Caenorhabditiselegans.G5EG86, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 45.5 A96-B4 ( A96 B4 )
2 44.6 A96-B3 ( A96 B3 )
3 42.3 A89-B2 ( A89 B2 )
4 41.1 A39-B2 ( A39 B2 )
5 41.1 A50-B2 ( A50 B2 )
6 41.1 A61-B2 ( A61 B2 )
7 40.4 A67-B2 ( A67 B2 )
8 40.4 A78-B2 ( A78 B2 )
9 38.5 A110-B13 ( A110 B13 )
10 38 A25-B12 ( A25 B12 )
11 37.5 A98-B5 ( A98 B5 )
12 37 A27-B14 ( A27 B14 )
13 36.4 A112-B2 ( A112 B2 )
14 36.4 A114-B3 ( A114 B3 )
15 36.2 A72-B2 ( A72 B2 )
16 36.2 A83-B2 ( A83 B2 )
17 36.1 A41-B3 ( A41 B3 )
18 36 A98-B15 ( A98 B15 )
19 35.8 A21-B1 ( A21 B1 )
20 35.2 A39-B10 ( A39 B10 )