A=Drosophilamelanogaster.Q9W157, B=Drosophilapseudoobscura.Q28WW7, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 260.2 A6-B8 A11-B13 A16-B18 A31-B33 A38-B40 A66-B68 ( A6 B8 A11 B13 A16 B18 A31 B33 A38 B40 A66 B68 )
2 258.2 A4-B6 A9-B11 A14-B16 A31-B33 A38-B40 A66-B68 ( A4 B6 A9 B11 A14 B16 A31 B33 A38 B40 A66 B68 )
3 246.5 A45-B73 A56-B84 A61-B89 A66-B94 A84-B112 A89-B117 ( A45 B73 A56 B84 A61 B89 A66 B94 A84 B112 A89 B117 )
4 242.9 A45-B72 A53-B80 A58-B85 A63-B90 A85-B112 A90-B117 ( A45 B72 A53 B80 A58 B85 A63 B90 A85 B112 A90 B117 )
5 238.5 A8-B11 A13-B16 A18-B21 A29-B32 A34-B37 A75-B78 ( A8 B11 A13 B16 A18 B21 A29 B32 A34 B37 A75 B78 )
6 234.2 A16-B20 A21-B25 A29-B33 A45-B49 A53-B57 A74-B78 ( A16 B20 A21 B25 A29 B33 A45 B49 A53 B57 A74 B78 )
7 234 A2-B3 A7-B8 A12-B13 A57-B58 A65-B66 A78-B79 ( A2 B3 A7 B8 A12 B13 A57 B58 A65 B66 A78 B79 )
8 232.2 A38-B32 A45-B39 A56-B50 A61-B55 A67-B61 A74-B68 ( A38 B32 A45 B39 A56 B50 A61 B55 A67 B61 A74 B68 )
9 225.3 A22-B27 A45-B50 A55-B60 A63-B68 A68-B73 A74-B79 ( A22 B27 A45 B50 A55 B60 A63 B68 A68 B73 A74 B79 )
10 222.7 A10-B12 A15-B17 A31-B33 A38-B40 A66-B68 ( A10 B12 A15 B17 A31 B33 A38 B40 A66 B68 )
11 222.4 A20-B25 A45-B50 A55-B60 A63-B68 A68-B73 A74-B79 ( A20 B25 A45 B50 A55 B60 A63 B68 A68 B73 A74 B79 )
12 214.6 A10-B13 A15-B18 A29-B32 A34-B37 A75-B78 ( A10 B13 A15 B18 A29 B32 A34 B37 A75 B78 )
13 207.7 A57-B85 A62-B90 A67-B95 A84-B112 A89-B117 ( A57 B85 A62 B90 A67 B95 A84 B112 A89 B117 )
14 207 A4-B5 A9-B10 A57-B58 A65-B66 A78-B79 ( A4 B5 A9 B10 A57 B58 A65 B66 A78 B79 )
15 207 A8-B10 A13-B15 A31-B33 A38-B40 A66-B68 ( A8 B10 A13 B15 A31 B33 A38 B40 A66 B68 )
16 206.2 A6-B7 A11-B12 A57-B58 A65-B66 A78-B79 ( A6 B7 A11 B12 A57 B58 A65 B66 A78 B79 )
17 205.1 A12-B14 A17-B19 A31-B33 A38-B40 A66-B68 ( A12 B14 A17 B19 A31 B33 A38 B40 A66 B68 )
18 202.1 A12-B15 A17-B20 A29-B32 A34-B37 A75-B78 ( A12 B15 A17 B20 A29 B32 A34 B37 A75 B78 )
19 202 A8-B9 A13-B14 A57-B58 A65-B66 A78-B79 ( A8 B9 A13 B14 A57 B58 A65 B66 A78 B79 )
20 196.3 A47-B68 A52-B73 A57-B78 A68-B89 A73-B94 ( A47 B68 A52 B73 A57 B78 A68 B89 A73 B94 )
21 194.6 A47-B41 A56-B50 A61-B55 A67-B61 A74-B68 ( A47 B41 A56 B50 A61 B55 A67 B61 A74 B68 )
23 192.3 A22-B26 A29-B33 A45-B49 A53-B57 A74-B78 ( A22 B26 A29 B33 A45 B49 A53 B57 A74 B78 )
24 191.1 A47-B63 A53-B69 A58-B74 A63-B79 A68-B84 ( A47 B63 A53 B69 A58 B74 A63 B79 A68 B84 )
25 190.3 A20-B24 A29-B33 A45-B49 A53-B57 A74-B78 ( A20 B24 A29 B33 A45 B49 A53 B57 A74 B78 )
26 187.5 A45-B66 A50-B71 A55-B76 A68-B89 A73-B94 ( A45 B66 A50 B71 A55 B76 A68 B89 A73 B94 )
28 171.4 A63-B91 A68-B96 A84-B112 A89-B117 ( A63 B91 A68 B96 A84 B112 A89 B117 )
29 167.8 A10-B11 A57-B58 A65-B66 A78-B79 ( A10 B11 A57 B58 A65 B66 A78 B79 )
30 166.6 A14-B17 A29-B32 A34-B37 A75-B78 ( A14 B17 A29 B32 A34 B37 A75 B78 )
32 164.7 A57-B84 A63-B90 A85-B112 A90-B117 ( A57 B84 A63 B90 A85 B112 A90 B117 )
33 164.5 A59-B86 A64-B91 A85-B112 A90-B117 ( A59 B86 A64 B91 A85 B112 A90 B117 )
34 164.4 A45-B44 A56-B55 A68-B67 A73-B72 ( A45 B44 A56 B55 A68 B67 A73 B72 )
35 164.4 A16-B19 A29-B32 A34-B37 A75-B78 ( A16 B19 A29 B32 A34 B37 A75 B78 )
38 158.7 A47-B46 A56-B55 A68-B67 A73-B72 ( A47 B46 A56 B55 A68 B67 A73 B72 )
40 157.6 A45-B55 A55-B65 A68-B78 A73-B83 ( A45 B55 A55 B65 A68 B78 A73 B83 )
41 157 A57-B40 A63-B46 A68-B51 A74-B57 ( A57 B40 A63 B46 A68 B51 A74 B57 )
42 156.3 A31-B35 A45-B49 A53-B57 A74-B78 ( A31 B35 A45 B49 A53 B57 A74 B78 )
43 156.1 A45-B67 A55-B77 A61-B83 A66-B88 ( A45 B67 A55 B77 A61 B83 A66 B88 )
44 155.5 A45-B77 A50-B82 A56-B88 A69-B101 ( A45 B77 A50 B82 A56 B88 A69 B101 )
47 151.9 A47-B57 A55-B65 A68-B78 A73-B83 ( A47 B57 A55 B65 A68 B78 A73 B83 )
48 151 A57-B62 A63-B68 A68-B73 A74-B79 ( A57 B62 A63 B68 A68 B73 A74 B79 )
50 150.8 A47-B79 A52-B84 A57-B89 A69-B101 ( A47 B79 A52 B84 A57 B89 A69 B101 )
51 150.6 A45-B45 A55-B55 A61-B61 A66-B66 ( A45 B45 A55 B55 A61 B61 A66 B66 )
53 149 A45-B56 A55-B66 A61-B72 A66-B77 ( A45 B56 A55 B66 A61 B72 A66 B77 )
55 135.4 A57-B46 A62-B51 A67-B56 ( A57 B46 A62 B51 A67 B56 )
56 134.1 A57-B68 A62-B73 A67-B78 ( A57 B68 A62 B73 A67 B78 )
57 132.5 A57-B79 A62-B84 A67-B89 ( A57 B79 A62 B84 A67 B89 )
58 132 A69-B97 A84-B112 A89-B117 ( A69 B97 A84 B112 A89 B117 )
60 131.7 A57-B57 A62-B62 A67-B67 ( A57 B57 A62 B62 A67 B67 )
61 128 A31-B34 A38-B41 A75-B78 ( A31 B34 A38 B41 A75 B78 )
63 124.1 A33-B36 A38-B41 A75-B78 ( A33 B36 A38 B41 A75 B78 )
65 122.1 A57-B56 A68-B67 A73-B72 ( A57 B56 A68 B67 A73 B72 )
66 122.1 A57-B45 A68-B56 A75-B63 ( A57 B45 A68 B56 A75 B63 )
67 120.5 A57-B67 A68-B78 A73-B83 ( A57 B67 A68 B78 A73 B83 )
69 119 A57-B74 A63-B80 A68-B85 ( A57 B74 A63 B80 A68 B85 )
70 119 A61-B40 A66-B45 A79-B58 ( A61 B40 A66 B45 A79 B58 )
73 118.1 A57-B51 A63-B57 A74-B68 ( A57 B51 A63 B57 A74 B68 )
74 117.2 A61-B73 A66-B78 A78-B90 ( A61 B73 A66 B78 A78 B90 )
75 116.6 A87-B114 A92-B119 ( A87 B114 A92 B119 )
76 116.3 A61-B38 A68-B45 A73-B50 ( A61 B38 A68 B45 A73 B50 )
77 116.2 A59-B80 A68-B89 A73-B94 ( A59 B80 A68 B89 A73 B94 )
79 115.3 A57-B47 A66-B56 A78-B68 ( A57 B47 A66 B56 A78 B68 )
80 114.5 A45-B60 A53-B68 A74-B89 ( A45 B60 A53 B68 A74 B89 )
82 114.5 A57-B69 A65-B77 A78-B90 ( A57 B69 A65 B77 A78 B90 )
84 114.4 A57-B73 A63-B79 A68-B84 ( A57 B73 A63 B79 A68 B84 )
85 114.3 A57-B80 A65-B88 A70-B93 ( A57 B80 A65 B88 A70 B93 )
86 114.2 A38-B58 A74-B94 A83-B103 ( A38 B58 A74 B94 A83 B103 )
87 114 A55-B44 A61-B50 A66-B55 ( A55 B44 A61 B50 A66 B55 )
91 113.4 A33-B35 A38-B40 A66-B68 ( A33 B35 A38 B40 A66 B68 )
93 113.4 A59-B69 A68-B78 A73-B83 ( A59 B69 A68 B78 A73 B83 )
94 113.1 A63-B40 A68-B45 A73-B50 ( A63 B40 A68 B45 A73 B50 )
97 112.7 A61-B44 A67-B50 A74-B57 ( A61 B44 A67 B50 A74 B57 )
98 112.2 A59-B47 A68-B56 A75-B63 ( A59 B47 A68 B56 A75 B63 )
99 112.2 A59-B58 A68-B67 A73-B72 ( A59 B58 A68 B67 A73 B72 )
102 110.8 A57-B83 A86-B112 A93-B119 ( A57 B83 A86 B112 A93 B119 )
103 108.9 A59-B53 A67-B61 A74-B68 ( A59 B53 A67 B61 A74 B68 )
104 108.8 A87-B115 A92-B120 ( A87 B115 A92 B120 )
105 97.2 A63-B85 A68-B90 ( A63 B85 A68 B90 )
106 92.7 A85-B113 A90-B118 ( A85 B113 A90 B118 )
107 91.5 A63-B52 A68-B57 ( A63 B52 A68 B57 )
109 88.2 A63-B74 A68-B79 ( A63 B74 A68 B79 )
110 87.7 A63-B41 A68-B46 ( A63 B41 A68 B46 )
111 87.4 A61-B45 A66-B50 ( A61 B45 A66 B50 )
112 87.3 A67-B79 A78-B90 ( A67 B79 A78 B90 )
113 86.7 A61-B67 A66-B72 ( A61 B67 A66 B72 )
114 86.7 A61-B78 A66-B83 ( A61 B78 A66 B83 )
115 86.4 A63-B63 A68-B68 ( A63 B63 A68 B68 )
116 85.5 A69-B90 A74-B95 ( A69 B90 A74 B95 )
117 85.3 A67-B68 A78-B79 ( A67 B68 A78 B79 )
118 84.4 A38-B47 A74-B83 ( A38 B47 A74 B83 )
119 83.7 A67-B46 A79-B58 ( A67 B46 A79 B58 )
120 83.5 A61-B56 A66-B61 ( A61 B56 A66 B61 )
121 83.3 A61-B39 A66-B44 ( A61 B39 A66 B44 )
122 83.2 A87-B113 A93-B119 ( A87 B113 A93 B119 )
123 82.9 A63-B47 A68-B52 ( A63 B47 A68 B52 )
124 82.8 A63-B58 A68-B63 ( A63 B58 A68 B63 )
125 82.8 A63-B69 A68-B74 ( A63 B69 A68 B74 )
127 81.7 A67-B57 A78-B68 ( A67 B57 A78 B68 )
128 81.7 A67-B85 A79-B97 ( A67 B85 A79 B97 )
129 81.6 A57-B50 A74-B67 ( A57 B50 A74 B67 )
130 81.6 A57-B61 A74-B78 ( A57 B61 A74 B78 )
131 80.1 A65-B49 A70-B54 ( A65 B49 A70 B54 )
132 79.9 A61-B84 A66-B89 ( A61 B84 A66 B89 )
133 79.3 A57-B39 A74-B56 ( A57 B39 A74 B56 )
134 79.1 A47-B90 A52-B95 ( A47 B90 A52 B95 )
135 79.1 A50-B21 A74-B45 ( A50 B21 A74 B45 )
136 78.5 A59-B48 A66-B55 ( A59 B48 A66 B55 )
142 77.7 A65-B71 A70-B76 ( A65 B71 A70 B76 )
143 77.6 A67-B96 A85-B114 ( A67 B96 A85 B114 )
144 77.5 A45-B88 A50-B93 ( A45 B88 A50 B93 )
145 77.4 A52-B28 A73-B49 ( A52 B28 A73 B49 )
147 76.4 A75-B95 A83-B103 ( A75 B95 A83 B103 )
148 76.2 A69-B81 A78-B90 ( A69 B81 A78 B90 )
150 75.6 A45-B78 A55-B88 ( A45 B78 A55 B88 )
151 74.9 A75-B83 A89-B97 ( A75 B83 A89 B97 )
152 74.6 A59-B75 A68-B84 ( A59 B75 A68 B84 )
153 74.4 A38-B80 A76-B118 ( A38 B80 A76 B118 )
155 74.3 A59-B91 A69-B101 ( A59 B91 A69 B101 )
156 74.3 A67-B74 A79-B86 ( A67 B74 A79 B86 )
157 74.2 A69-B70 A78-B79 ( A69 B70 A78 B79 )
159 73.8 A57-B72 A74-B89 ( A57 B72 A74 B89 )
160 73.8 A59-B37 A65-B43 ( A59 B37 A65 B43 )
161 73.4 A41-B21 A67-B47 ( A41 B21 A67 B47 )
164 73.2 A65-B87 A70-B92 ( A65 B87 A70 B92 )
166 73.1 A45-B83 A55-B93 ( A45 B83 A55 B93 )
167 73 A69-B48 A79-B58 ( A69 B48 A79 B58 )
169 72.8 A45-B84 A55-B94 ( A45 B84 A55 B94 )
171 71 A69-B59 A78-B68 ( A69 B59 A78 B68 )
172 62.5 A93-B120 ( A93 B120 )
173 59.3 A67-B90 ( A67 B90 )
174 52.8 A57-B95 ( A57 B95 )
175 50 A69-B91 ( A69 B91 )
176 49.1 A59-B97 ( A59 B97 )
177 48.1 A67-B45 ( A67 B45 )
179 47.4 A57-B96 ( A57 B96 )
180 47.2 A75-B96 ( A75 B96 )
181 47.1 A67-B73 ( A67 B73 )
182 47.1 A67-B84 ( A67 B84 )
183 47.1 A75-B46 ( A75 B46 )
184 47.1 A75-B57 ( A75 B57 )
185 47.1 A75-B68 ( A75 B68 )
186 47.1 A75-B79 ( A75 B79 )
190 46.3 A69-B92 ( A69 B92 )
191 45.3 A57-B90 ( A57 B90 )
193 45.1 A33-B67 ( A33 B67 )
194 45.1 A33-B78 ( A33 B78 )
195 45.1 A67-B51 ( A67 B51 )
196 44.4 A65-B60 ( A65 B60 )
197 44.4 A69-B47 ( A69 B47 )
198 44.4 A69-B58 ( A69 B58 )
200 44 A47-B96 ( A47 B96 )
201 43.8 A67-B91 ( A67 B91 )
202 43.1 A33-B89 ( A33 B89 )
203 43.1 A36-B110 ( A36 B110 )
204 43.1 A67-B62 ( A67 B62 )
205 42.9 A89-B116 ( A89 B116 )
207 42.1 A69-B75 ( A69 B75 )
208 42.1 A69-B86 ( A69 B86 )
210 41.5 A77-B98 ( A77 B98 )
211 41.2 A65-B82 ( A65 B82 )
212 41.2 A75-B90 ( A75 B90 )
213 41.1 A69-B69 ( A69 B69 )
214 41.1 A69-B80 ( A69 B80 )
215 40.6 A75-B50 ( A75 B50 )
216 40.4 A77-B36 ( A77 B36 )
217 40 A45-B94 ( A45 B94 )
220 39.2 A79-B91 ( A79 B91 )
221 38.9 A6-B87 ( A6 B87 )
222 38.9 A59-B114 ( A59 B114 )
223 38.9 A61-B35 ( A61 B35 )
224 38.9 A75-B51 ( A75 B51 )
225 38.9 A75-B62 ( A75 B62 )
226 38.9 A91-B119 ( A91 B119 )
229 38.5 A75-B40 ( A75 B40 )
231 38.2 A38-B91 ( A38 B91 )
234 37.5 A67-B69 ( A67 B69 )
235 37.5 A67-B80 ( A67 B80 )
236 37.5 A69-B53 ( A69 B53 )
238 37.5 A75-B61 ( A75 B61 )
240 37.5 A75-B73 ( A75 B73 )
241 37.5 A75-B84 ( A75 B84 )
242 37.5 A91-B118 ( A91 B118 )
243 37.3 A14-B61 ( A14 B61 )
246 37.3 A75-B45 ( A75 B45 )
247 37.3 A75-B56 ( A75 B56 )
248 37.3 A79-B47 ( A79 B47 )
250 37.3 A79-B69 ( A79 B69 )
251 37.3 A79-B80 ( A79 B80 )
252 37 A71-B40 ( A71 B40 )
253 37 A75-B74 ( A75 B74 )
254 37 A75-B85 ( A75 B85 )
255 37 A79-B75 ( A79 B75 )
257 36.5 A8-B96 ( A8 B96 )
258 36.4 A38-B69 ( A38 B69 )
260 36.4 A67-B58 ( A67 B58 )
261 36.4 A75-B72 ( A75 B72 )
262 36.2 A69-B64 ( A69 B64 )
264 36.2 A73-B60 ( A73 B60 )
265 36.1 A47-B91 ( A47 B91 )
266 36.1 A75-B67 ( A75 B67 )
269 36 A85-B19 ( A85 B19 )
271 35.8 A59-B92 ( A59 B92 )
272 35.7 A38-B52 ( A38 B52 )
273 35.7 A45-B89 ( A45 B89 )
274 35.7 A75-B52 ( A75 B52 )
275 35.6 A75-B69 ( A75 B69 )
276 35.6 A75-B80 ( A75 B80 )