A=Drosophilamelanogaster.Q9W157, B=Caenorhabditiselegans.G5EG86, Threshold for similarity =35, length of fragment = 50, sorted based on average %similarity, Multiply index with 10 to get sequence starting position in original sequence
Sl no. Average Score Fragment alignment Fasta links
1 39.6 A93-B21 ( A93 B21 )
2 39.0 A76-B4 A93-B21 ( A76 B4 A93 B21 )
3 38.5 A59-B3 ( A59 B3 )
4 37.9 A57-B2 ( A57 B2 )
5 37.5 A57-B1 ( A57 B1 )
6 37.3 A18-B26 ( A18 B26 )
7 37.3 A55-B21 ( A55 B21 )
8 37.0 A33-B3 ( A33 B3 )
9 36.5 A79-B4 ( A79 B4 )
10 36.0 A10-B10 ( A10 B10 )
11 35.3 A90-B9 ( A90 B9 )
12 35.2 A47-B23 ( A47 B23 )
13 35.2 A62-B3 ( A62 B3 )