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bfast_pe_run.sh (0.51 kB)
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bfast_se_run.sh (0.52 kB)
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bowtie2_pe_run.sh (0.33 kB)
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bowtie2_se_run.sh (0.3 kB)
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bwa_pe_run.sh (0.49 kB)
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bwa_se_run.sh (0.45 kB)
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mosaik_pe_run.sh (0.62 kB)
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mosaik_se_run.sh (0.63 kB)
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novo_pe_run.sh (0.3 kB)
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novo_se_run.sh (0.28 kB)
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omixon_pe_run.sh (0.52 kB)
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omixon_se_run.sh (0.52 kB)
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smalt_pe_run.sh (0.37 kB)
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smalt_se_run.sh (0.33 kB)
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stampy_pe_run.sh (0.38 kB)
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stampy_se_run.sh (0.36 kB)
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Aligner execution scripts
dataset
posted on 2012-10-02, 08:54 authored by Gavin OliverBASH scripts to process SAM files and perform variant calling with GATK