10.6084/m9.figshare.988699.v1 Nicola Fameli Nicola Fameli Oluseye A. Ogunbayo Oluseye A. Ogunbayo Cornelis van Breemen Cornelis van Breemen A. Mark Evans A. Mark Evans L-SR nanojunction study data f1000research.com 2014 nano junctions calcium signalling lysosomes sarcoplasmic reticulum Cell Biology 2014-04-23 07:36:17 Dataset https://f1000.figshare.com/articles/dataset/L_SR_nanojunction_study_data/988699 <p>Figure_1_ms_suppl.csv<br>Calcium fluorescence<br>Fura-2-AM calcium fluorescence imaging data set used to produce the graphs in Figure 1 of the manuscript as well as Figure 1 in the supplement file to the main manuscript. Data are in a csv file with columns headers for indicating the data in each column.</p> <p>Figure_2_B-D.csv<br>L-SR characterization<br>Data for image analysis statistics shown in Figure 2B-D and gathered from transmission electron micrographs. Data are in comma-separated columns in a simple text file. Column headers indicate the quantity and units listed in each column.</p> <p>Figure_6A.txt<br>TPC2 open probability vs lysosomal luminal [Ca2+]<br>Data used for plot in Figure 6A and obtained from analysis of experimental results in Pitt S et al 2010 (see manuscript references). Data are in space/tab-separated columns in a simple text file. Column headers indicate the quantity and units listed in each column.</p> <p>Figure_6B.txt<br>TPC2 Ca2+ release rate vs time<br>Data used for plot in Figure 6B and obtained as described in section “L-SR junctional Ca2+ signal”. Data are in space/tab-separated columns in a simple text file. Column headers indicate the quantity and units listed in each column.</p> <p>Figure_7A_20_nm.txt, Figure_7A_50_nm.txt, Figure_7A_100_nm.txt<br>Nanojunctional [Ca2+] vs time<br>Data for plot in Figure 7A and obtained as average over 100 simulations each started with a different random number generator seed (as described in section “L-SR junctional Ca2+ signal”). The files contain data from simulations with L-SR junctional separations of 20, 50 and 100 nm, respectively. Data are in space/tab-separated columns in a simple text file. Column headers indicate the quantity and units listed in each column.</p> <p>Figure_7B.txt<br>Nanojunctional [Ca2+] vs L-SR separation distance<br>Data for plot in Figure 7B, solid circles, obtained by temporal average of data in figure 7A over entire time interval. Data are in space/tab-separated columns in a simple text file. Column headers indicate the quantity and units listed in each column.</p> <p>Figure_7B_short_t_avg.txt<br>Nanojunctional [Ca2+] vs L-SR separation distance<br>Data for plot in Figure 7B, empty circles, obtained by temporal average of data in figure 7A over a shorter time interval, as described in section “Reconciling the temporal scales in simulation and experimental results”. Data are in space/tab-separated columns in a simple text file. Column headers indicate the quantity and units listed in each column.</p> <p> </p>