10.6084/m9.figshare.902838.v1
Soma Ghosh
Soma
Ghosh
Saraswathi Vishveshwara
Saraswathi
Vishveshwara
Native and non-native structures used to generate Protein Structure Networks
f1000research.com
2014
protein structure
quality
networks
rank
support vector machines
Bioinformatics
2014-01-21 15:30:10
Dataset
https://f1000.figshare.com/articles/dataset/Native_and_non_native_structures_used_to_generate_Protein_Structure_Networks/902838
<p>Dataset 1: List of 5422 native protein structures<br>The positive dataset (PSN-QA_positive) used in this study consisted of 5422 native protein structures, that were downloaded using PISCES. Three letter codes of the PDBs are provided.</p>
<p>Dataset 2: Details of the decoy dataset.<br>The negative dataset (PSN-QA_negative) used in this study were obtained from various publicly available resources.</p>
<p>Dataset 3: Data used to generate Figure 1 in the associated article. This file contains the value of SLClu (size of the largest cluster) for example protein structures at different Imin values (interaction strength cutoffs).</p>
<p>Dataset 4: Data used to generate Figure 2 in the associated article. The file contains the rank values obtained by the native and the decoy datasets. Please note that we have not kept a track of the correspondence between the Id and PDB Ids.</p>
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